HL_8UU6_019

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAAAAG

Length

9 nucleotides

Bulged bases

8UU6|1|A|A|658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_019 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.2128

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8UU6|1|A|C|654
8UU6|1|A|G|655
8UU6|1|A|G|656
8UU6|1|A|A|657
8UU6|1|A|A|658
8UU6|1|A|A|659
8UU6|1|A|A|660
8UU6|1|A|A|661
8UU6|1|A|G|662

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4