HL_8UU8_012

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACAGCC

Length

9 nucleotides

Bulged bases

8UU8|1|A|A|372, 8UU8|1|A|A|373, 8UU8|1|A|C|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU8_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.117

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8UU8|1|A|G|370
8UU8|1|A|U|371
8UU8|1|A|A|372
8UU8|1|A|A|373
8UU8|1|A|C|374
8UU8|1|A|A|375
8UU8|1|A|G|376
8UU8|1|A|C|377
8UU8|1|A|C|378

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain W

Large ribosomal subunit protein uL24