HL_8UU8_076

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUUUCGGCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU8_076 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.5538

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

8UU8|1|a|G|215
8UU8|1|a|G|216
8UU8|1|a|U|217
8UU8|1|a|U|218
8UU8|1|a|U|219
8UU8|1|a|C|220
8UU8|1|a|G|221
8UU8|1|a|G|222
8UU8|1|a|C|223
8UU8|1|a|U|224

Current chains

Chain a

16S Ribosomal RNA

Nearby chains