HL_8UU9_059

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUCCACAU

Length

9 nucleotides

Bulged bases

8UU9|1|A|U|2506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU9_059 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.3861

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8UU9|1|A|A|2504
8UU9|1|A|G|2505
8UU9|1|A|U|2506
8UU9|1|A|C|2507
8UU9|1|A|C|2508
8UU9|1|A|A|2509
8UU9|1|A|C|2510
8UU9|1|A|A|2511
8UU9|1|A|U|2512

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain v

GTPase HflX