HL_8UXA_038

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAGGAAAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_038 not in the Motif Atlas

Geometric match to HL_8GLP_061

Geometric discrepancy: 0.1623

The information below is about HL_8GLP_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8UXA|1|A|U|2454
8UXA|1|A|A|2455
8UXA|1|A|A|2456
8UXA|1|A|G|2457
8UXA|1|A|G|2458
8UXA|1|A|A|2459
8UXA|1|A|A|2460
8UXA|1|A|A|2461
8UXA|1|A|A|2462

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL5m