HL_8UXA_043

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUAGAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_043 not in the Motif Atlas

Geometric match to HL_9E6Q_058

Geometric discrepancy: 0.2477

The information below is about HL_9E6Q_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8UXA|1|A|A|2737
8UXA|1|A|G|2738
8UXA|1|A|U|2739
8UXA|1|A|A|2740
8UXA|1|A|G|2741
8UXA|1|A|A|2742
8UXA|1|A|U|2743
8UXA|1|A|A|2744
8UXA|1|A|U|2745

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL36m

Chain F

Large ribosomal subunit protein uL6m

Chain K

Large ribosomal subunit protein uL16m