HL_8UXA_072
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGAAAUUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UXA_072 not in the Motif Atlas
- Homologous match to HL_6CZR_100
- Geometric discrepancy: 0.2345
- The information below is about HL_6CZR_100
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.2
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8UXA|1|AL|C|1382
8UXA|1|AL|U|1383
8UXA|1|AL|G|1384
8UXA|1|AL|A|1385
8UXA|1|AL|A|1386
8UXA|1|AL|A|1387
8UXA|1|AL|U|1388
8UXA|1|AL|U|1389
8UXA|1|AL|C|1390
8UXA|1|AL|G|1391
Current chains
- Chain AL
- Small ribosomal subunit rRNA
Nearby chains
- Chain AJ
- Small ribosomal subunit protein mS33
- Chain s
- Small ribosomal subunit protein uS13m
- Chain t
- 37S ribosomal protein MRP2, mitochondrial
- Chain y
- Small ribosomal subunit protein uS19m
Coloring options: