HL_8UYP_015

3D structure

PDB id

8UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-1 5' proximal stem-loop 5

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UYP_015 not in the Motif Atlas

Geometric match to HL_5D5L_001

Geometric discrepancy: 0.1833

The information below is about HL_5D5L_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8UYP|13|A|C|254
8UYP|13|A|G|255
8UYP|13|A|A|256
8UYP|13|A|A|257
8UYP|13|A|A|258
8UYP|13|A|G|259

Current chains

Chain A

SARS-CoV-1 5' proximal stem-loop 5

Nearby chains