HL_8V83_005

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8V83|1|1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V83_005 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.0734

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8V83|1|1|U|194
8V83|1|1|U|195
8V83|1|1|G|196
8V83|1|1|G|197
8V83|1|1|A|198
8V83|1|1|A|199
8V83|1|1|C|200
8V83|1|1|A|201

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain I

Ribosome biogenesis protein NSA1

Chain R

Protein MAK16

Chain Y

60S ribosomal protein L26-A

Chain e

60S ribosomal protein L32

Chain x

Ribosome production factor 1