HL_8V83_023

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V83_023 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.2521

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8V83|1|1|G|1126
8V83|1|1|G|1127
8V83|1|1|U|1128
8V83|1|1|A|1129
8V83|1|1|A|1130
8V83|1|1|G|1131
8V83|1|1|C|1132

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain J

rRNA-processing protein EBP2

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2