HL_8V83_030

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8V83|1|1|A|2372, 8V83|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V83_030 not in the Motif Atlas

Geometric match to HL_4FRN_007

Geometric discrepancy: 0.3276

The information below is about HL_4FRN_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8V83|1|1|G|2369
8V83|1|1|G|2370
8V83|1|1|G|2371
8V83|1|1|A|2372
8V83|1|1|A|2373
8V83|1|1|C|2374
8V83|1|1|G|2375
8V83|1|1|G|2376
8V83|1|1|G|2377
8V83|1|1|C|2378

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain 8

Ribosomal RNA-processing protein 14