HL_8V83_034

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

8V83|1|1|G|2966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V83_034 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1819

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8V83|1|1|C|2963
8V83|1|1|G|2964
8V83|1|1|U|2965
8V83|1|1|G|2966
8V83|1|1|A|2967
8V83|1|1|G|2968

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain l

60S ribosome subunit biogenesis protein NIP7

Chain r

Ribosome biogenesis protein NSA2