HL_8V84_041

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8V84|1|1|U|3351, 8V84|1|1|U|3352

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V84_041 not in the Motif Atlas

Geometric match to HL_5TBW_004

Geometric discrepancy: 0.3334

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8V84|1|1|C|3350
8V84|1|1|U|3351
8V84|1|1|U|3352
8V84|1|1|G|3353

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains