HL_8V87_008

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

8V87|1|1|A|284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V87_008 not in the Motif Atlas

Geometric match to HL_5TBW_008

Geometric discrepancy: 0.1085

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8V87|1|1|U|278
8V87|1|1|U|279
8V87|1|1|U|280
8V87|1|1|G|281
8V87|1|1|G|282
8V87|1|1|G|283
8V87|1|1|A|284
8V87|1|1|A|285
8V87|1|1|U|286
8V87|1|1|G|287

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain A

Ribosome biogenesis protein BRX1

Chain L

60S ribosomal protein L13-A

Chain N

Large ribosomal subunit protein eL15A