HL_8V87_014
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V87_014 not in the Motif Atlas
- Geometric match to HL_8C3A_015
- Geometric discrepancy: 0.3743
- The information below is about HL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8V87|1|1|U|640
8V87|1|1|C|641
8V87|1|1|U|642
8V87|1|1|U|643
8V87|1|1|G|644
8V87|1|1|A|645
8V87|1|1|A|646
8V87|1|1|A|647
8V87|1|1|C|648
8V87|1|1|A|649
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain e
- 60S ribosomal protein L32
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
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