HL_8V87_026
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UGUAACAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V87_026 not in the Motif Atlas
- Geometric match to HL_5D8H_002
- Geometric discrepancy: 0.1801
- The information below is about HL_5D8H_002
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 10
Unit IDs
8V87|1|1|U|1267
8V87|1|1|G|1268
8V87|1|1|U|1269
8V87|1|1|A|1270
8V87|1|1|A|1271
8V87|1|1|C|1272
8V87|1|1|A|1273
8V87|1|1|A|1274
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- ATP-dependent RNA helicase DBP10
- Chain W
- Ribosome assembly factor MRT4
- Chain b
- Nucleolar GTP-binding protein 1
- Chain r
- Ribosome biogenesis protein NSA2
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