HL_8V87_062
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 8V87|1|1|G|2898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V87_062 not in the Motif Atlas
- Homologous match to HL_8P9A_173
- Geometric discrepancy: 0.2238
- The information below is about HL_8P9A_173
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_46665.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8V87|1|1|A|2897
8V87|1|1|G|2898
8V87|1|1|C|2899
8V87|1|1|A|2900
8V87|1|1|G|2901
8V87|1|1|A|2902
8V87|1|1|A|2903
8V87|1|1|U|2904
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- ATP-dependent RNA helicase DBP10
- Chain H
- Large ribosomal subunit protein uL6A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain r
- Ribosome biogenesis protein NSA2
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