HL_8V9J_091
3D structure
- PDB id
- 8V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8V9J|1|a|U|773
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V9J_091 not in the Motif Atlas
- Homologous match to HL_5J7L_017
- Geometric discrepancy: 0.1446
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8V9J|1|a|G|766
8V9J|1|a|A|767
8V9J|1|a|U|768
8V9J|1|a|U|769
8V9J|1|a|A|770
8V9J|1|a|G|771
8V9J|1|a|A|772
8V9J|1|a|U|773
8V9J|1|a|A|774
8V9J|1|a|C|775
8V9J|1|a|C|776
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain k
- 30S ribosomal protein S11
- Chain v
- poly-U mRNA
- Chain y
- Transfer RNA; tRNA
Coloring options: