HL_8V9K_010

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUACCUG

Length

8 nucleotides

Bulged bases

8V9K|1|A|C|338, 8V9K|1|A|U|339

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9K_010 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3572

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8V9K|1|A|U|337
8V9K|1|A|C|338
8V9K|1|A|U|339
8V9K|1|A|A|340
8V9K|1|A|C|341
8V9K|1|A|C|342
8V9K|1|A|U|343
8V9K|1|A|G|344

Current chains

Chain A

23S Ribosomal RNA

Nearby chains