HL_8V9K_011

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

8V9K|1|A|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9K_011 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1743

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

8V9K|1|A|U|387
8V9K|1|A|U|388
8V9K|1|A|G|389
8V9K|1|A|G|390
8V9K|1|A|G|391
8V9K|1|A|A|392
8V9K|1|A|U|393
8V9K|1|A|G|394

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L24