HL_8V9K_025
3D structure
- PDB id
- 8V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUGAAGAC
- Length
- 10 nucleotides
- Bulged bases
- 8V9K|1|A|U|862, 8V9K|1|A|G|866, 8V9K|1|A|A|867
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V9K_025 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.1363
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8V9K|1|A|G|859
8V9K|1|A|G|860
8V9K|1|A|U|861
8V9K|1|A|U|862
8V9K|1|A|G|863
8V9K|1|A|A|864
8V9K|1|A|A|865
8V9K|1|A|G|866
8V9K|1|A|A|867
8V9K|1|A|C|868
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain 6
- 50S ribosomal protein L34
- Chain D
- 50S ribosomal protein L3
- Chain U
- Large ribosomal subunit protein uL22
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