HL_8V9K_032

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9K_032 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1297

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

8V9K|1|A|C|1210
8V9K|1|A|G|1211
8V9K|1|A|U|1212
8V9K|1|A|A|1213
8V9K|1|A|A|1214
8V9K|1|A|U|1215
8V9K|1|A|A|1216
8V9K|1|A|G|1217

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain J

50S ribosomal protein L11

Chain z

Ribosome hibernation factor Balon (Rv2629)