HL_8V9K_039
3D structure
- PDB id
- 8V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AAAAGGCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V9K_039 not in the Motif Atlas
- Geometric match to HL_4LX6_002
- Geometric discrepancy: 0.3785
- The information below is about HL_4LX6_002
- Detailed Annotation
- Purine riboswitch
- Broad Annotation
- Purine riboswitch
- Motif group
- HL_78364.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8V9K|1|A|A|1563
8V9K|1|A|A|1564
8V9K|1|A|A|1565
8V9K|1|A|A|1566
8V9K|1|A|G|1605
8V9K|1|A|G|1606
8V9K|1|A|C|1607
8V9K|1|A|U|1608
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: