3D structure

PDB id
8V9K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AAAAGGCU
Length
8 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8V9K_039 not in the Motif Atlas
Geometric match to HL_4LX6_002
Geometric discrepancy: 0.3785
The information below is about HL_4LX6_002
Detailed Annotation
Purine riboswitch
Broad Annotation
Purine riboswitch
Motif group
HL_78364.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

8V9K|1|A|A|1563
8V9K|1|A|A|1564
8V9K|1|A|A|1565
8V9K|1|A|A|1566
8V9K|1|A|G|1605
8V9K|1|A|G|1606
8V9K|1|A|C|1607
8V9K|1|A|U|1608

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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