HL_8V9K_042

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGUGAG

Length

8 nucleotides

Bulged bases

8V9K|1|A|U|1757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9K_042 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.313

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

8V9K|1|A|C|1753
8V9K|1|A|G|1754
8V9K|1|A|A|1755
8V9K|1|A|G|1756
8V9K|1|A|U|1757
8V9K|1|A|G|1758
8V9K|1|A|A|1759
8V9K|1|A|G|1760

Current chains

Chain A

23S Ribosomal RNA

Nearby chains