HL_8V9K_082

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9K_082 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.0898

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8V9K|1|a|U|296
8V9K|1|a|G|297
8V9K|1|a|A|298
8V9K|1|a|G|299
8V9K|1|a|A|300
8V9K|1|a|G|301

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain e

Small ribosomal subunit protein uS5

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17