HL_8V9K_100

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8V9K|1|a|G|1074

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9K_100 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1394

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

8V9K|1|a|G|1069
8V9K|1|a|U|1070
8V9K|1|a|U|1071
8V9K|1|a|A|1072
8V9K|1|a|A|1073
8V9K|1|a|G|1074
8V9K|1|a|U|1075
8V9K|1|a|C|1076

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain b

30S Ribosomal Protein S2

Chain g

30S ribosomal protein S7