HL_8V9L_069

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8V9L|1|A|G|2975, 8V9L|1|A|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_069 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1038

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8V9L|1|A|C|2969
8V9L|1|A|U|2970
8V9L|1|A|G|2971
8V9L|1|A|A|2972
8V9L|1|A|A|2973
8V9L|1|A|A|2974
8V9L|1|A|G|2975
8V9L|1|A|C|2976
8V9L|1|A|A|2977
8V9L|1|A|U|2978
8V9L|1|A|C|2979
8V9L|1|A|U|2980
8V9L|1|A|A|2981
8V9L|1|A|A|2982
8V9L|1|A|G|2983

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain G

50S ribosomal protein L6