HL_8V9L_114

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

(PSU)UGAAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_114 not in the Motif Atlas

Geometric match to HL_5VPO_138

Geometric discrepancy: 0.3611

The information below is about HL_5VPO_138

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8V9L|1|y|PSU|32
8V9L|1|y|U|33
8V9L|1|y|G|34
8V9L|1|y|A|35
8V9L|1|y|A|36
8V9L|1|y|A|37
8V9L|1|y|A|38

Current chains

Chain y

pe/E deacylated phenylanaline-tRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain i

30S ribosomal protein S9

Chain v

poly-U mRNA