HL_8VFT_008
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGCGGCG
- Length
- 7 nucleotides
- Bulged bases
- 8VFT|1|5|G|134, 8VFT|1|5|G|135, 8VFT|1|5|C|136
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VFT_008 not in the Motif Atlas
- Geometric match to HL_8VTW_010
- Geometric discrepancy: 0.1466
- The information below is about HL_8VTW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
8VFT|1|5|C|131
8VFT|1|5|G|132
8VFT|1|5|C|133
8VFT|1|5|G|134
8VFT|1|5|G|135
8VFT|1|5|C|136
8VFT|1|5|G|137
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain N
- eL15
- Chain h
- uL29
- Chain j
- eL37
Coloring options: