HL_8VFT_009

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8VFT|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_009 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.2963

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8VFT|1|5|U|204
8VFT|1|5|C|205
8VFT|1|5|U|206
8VFT|1|5|G|207
8VFT|1|5|A|208
8VFT|1|5|U|209
8VFT|1|5|C|210
8VFT|1|5|G|211

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain Y

uL24