HL_8VFT_011

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGUGAG(B9B)C

Length

9 nucleotides

Bulged bases

8VFT|1|5|G|232

QA status

Modified nucleotides: B9B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_011 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.4317

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8VFT|1|5|G|230
8VFT|1|5|U|231
8VFT|1|5|G|232
8VFT|1|5|U|233
8VFT|1|5|G|234
8VFT|1|5|A|235
8VFT|1|5|G|236
8VFT|1|5|B9B|237
8VFT|1|5|C|238

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

uL4

Chain Y

uL24