HL_8VFT_012
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 8VFT|1|5|G|294, 8VFT|1|5|A|295, 8VFT|1|5|A|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VFT_012 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.1726
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8VFT|1|5|C|289
8VFT|1|5|U|290
8VFT|1|5|U|291
8VFT|1|5|G|292
8VFT|1|5|G|293
8VFT|1|5|G|294
8VFT|1|5|A|295
8VFT|1|5|A|296
8VFT|1|5|U|297
8VFT|1|5|G|298
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain N
- eL15
- Chain Q
- eL18
- Chain a
- uL15
- Chain o
- eL42
Coloring options: