HL_8VFT_019

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

8VFT|1|5|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_019 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1121

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8VFT|1|5|U|1317
8VFT|1|5|C|1318
8VFT|1|5|U|1319
8VFT|1|5|U|1320
8VFT|1|5|G|1321
8VFT|1|5|1MA|1322
8VFT|1|5|A|1323
8VFT|1|5|A|1324
8VFT|1|5|C|1325
8VFT|1|5|A2M|1326

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain a

uL15

Chain e

eL32