HL_8VFT_035

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AG(OMC)A(OMG)UU

Length

7 nucleotides

Bulged bases

8VFT|1|5|G|2421, 8VFT|1|5|U|2425

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_035 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.1787

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8VFT|1|5|A|2420
8VFT|1|5|G|2421
8VFT|1|5|OMC|2422
8VFT|1|5|A|2423
8VFT|1|5|OMG|2424
8VFT|1|5|U|2425
8VFT|1|5|U|2426

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39