HL_8VFT_041

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCUCUU(PSU)

Length

9 nucleotides

Bulged bases

8VFT|1|5|U|2631

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_041 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.1817

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VFT|1|5|G|2624
8VFT|1|5|U|2625
8VFT|1|5|U|2626
8VFT|1|5|C|2627
8VFT|1|5|U|2628
8VFT|1|5|C|2629
8VFT|1|5|U|2630
8VFT|1|5|U|2631
8VFT|1|5|PSU|2632

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain U

eL22