HL_8VFT_042

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_042 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.3175

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8VFT|1|5|G|2664
8VFT|1|5|U|2665
8VFT|1|5|U|2666
8VFT|1|5|C|2667
8VFT|1|5|G|2668
8VFT|1|5|C|2669
8VFT|1|5|C|2670

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain p

eL43