HL_8VFT_066

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8VFT|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_066 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.1252

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8VFT|1|5|A|4474
8VFT|1|5|G|4475
8VFT|1|5|C|4476
8VFT|1|5|A|4477
8VFT|1|5|G|4478
8VFT|1|5|A|4479
8VFT|1|5|A|4480
8VFT|1|5|U|4481

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain m

eL40

Chain v

eEF2