HL_8VFT_073

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

8VFT|1|5|A|4910, 8VFT|1|5|A|4911, 8VFT|1|5|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_073 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3336

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8VFT|1|5|C|4906
8VFT|1|5|G|4907
8VFT|1|5|G|4908
8VFT|1|5|A|4909
8VFT|1|5|A|4910
8VFT|1|5|A|4911
8VFT|1|5|G|4912
8VFT|1|5|G|4913
8VFT|1|5|G|4914
8VFT|1|5|G|4915

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13