HL_8VFT_080
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8VFT|1|8|U|86
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VFT_080 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.4631
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8VFT|1|8|G|68
8VFT|1|8|U|69
8VFT|1|8|G|70
8VFT|1|8|A|71
8VFT|1|8|A|72
8VFT|1|8|U|73
8VFT|1|8|U|74
8VFT|1|8|OMG|75
8VFT|1|8|C|76
8VFT|1|8|A|77
8VFT|1|8|G|78
8VFT|1|8|G|79
8VFT|1|8|A|80
8VFT|1|8|C|81
8VFT|1|8|A|82
8VFT|1|8|C|83
8VFT|1|8|A|84
8VFT|1|8|U|85
8VFT|1|8|U|86
8VFT|1|8|G|87
8VFT|1|8|A|88
8VFT|1|8|U|89
8VFT|1|8|C|90
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- uL24
- Chain h
- uL29
- Chain j
- eL37
- Chain l
- eL39
Coloring options: