HL_8VFT_091

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8VFT|1|9|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_091 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.2355

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8VFT|1|9|C|462
8VFT|1|9|C|463
8VFT|1|9|A|464
8VFT|1|9|A|465
8VFT|1|9|G|466
8VFT|1|9|G|467

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain V

uL14

Chain W

eL24