HL_8VFT_102

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_102 not in the Motif Atlas

Homologous match to HL_8C3A_215

Geometric discrepancy: 0.1317

The information below is about HL_8C3A_215

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8VFT|1|9|G|1141
8VFT|1|9|G|1142
8VFT|1|9|A|1143
8VFT|1|9|A|1144
8VFT|1|9|A|1145
8VFT|1|9|C|1146

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

uS5

Chain WW

uS8

Chain aa

eS26