HL_8VFT_107

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8VFT|1|9|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VFT_107 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.1135

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8VFT|1|9|G|1366
8VFT|1|9|U|1367
8VFT|1|9|U|1368
8VFT|1|9|A|1369
8VFT|1|9|A|1370
8VFT|1|9|U|1371
8VFT|1|9|U|1372
8VFT|1|9|C|1373

Current chains

Chain 9

18S rRNA

Nearby chains

Chain RR

eS17