HL_8VFT_111
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 8VFT|1|9|C|1660, 8VFT|1|9|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VFT_111 not in the Motif Atlas
- Homologous match to HL_8C3A_225
- Geometric discrepancy: 0.2997
- The information below is about HL_8C3A_225
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01609.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
8VFT|1|9|G|1658
8VFT|1|9|U|1659
8VFT|1|9|C|1660
8VFT|1|9|A|1661
8VFT|1|9|U|1662
8VFT|1|9|A|1663
8VFT|1|9|A|1664
8VFT|1|9|G|1665
8VFT|1|9|C|1666
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain QQ
- uS9
- Chain SS
- uS13
- Chain TT
- eS19
- Chain UU
- uS10
- Chain dd
- uS14
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