HL_8VIO_093
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- CGGUGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VIO_093 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.1238
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8VIO|1|a|C|669
8VIO|1|a|G|670
8VIO|1|a|G|671
8VIO|1|a|U|672
8VIO|1|a|G|673
8VIO|1|a|G|674
8VIO|1|a|A|675
8VIO|1|a|A|676
8VIO|1|a|U|677
8VIO|1|a|G|678
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain q
- 30S ribosomal protein S11
Coloring options: