HL_8VK0_048
3D structure
- PDB id
- 8VK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- UUUACUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8VK0|1|A|A|1997, 8VK0|1|A|C|1998, 8VK0|1|A|U|1999, 8VK0|1|A|A|2003
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VK0_048 not in the Motif Atlas
- Homologous match to HL_4WF9_043
- Geometric discrepancy: 0.1115
- The information below is about HL_4WF9_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8VK0|1|A|U|1994
8VK0|1|A|U|1995
8VK0|1|A|U|1996
8VK0|1|A|A|1997
8VK0|1|A|C|1998
8VK0|1|A|U|1999
8VK0|1|A|A|2000
8VK0|1|A|A|2001
8VK0|1|A|A|2002
8VK0|1|A|A|2003
8VK0|1|A|A|2004
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- GTPase HflX
- Chain C
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L34
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