HL_8VK7_013

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GCCCGUGGAAU

Length

11 nucleotides

Bulged bases

8VK7|1|A|G|474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VK7_013 not in the Motif Atlas

Homologous match to HL_9DFE_012

Geometric discrepancy: 0.2903

The information below is about HL_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VK7|1|A|G|470
8VK7|1|A|C|471
8VK7|1|A|C|472
8VK7|1|A|C|473
8VK7|1|A|G|474
8VK7|1|A|U|475
8VK7|1|A|G|476
8VK7|1|A|G|477
8VK7|1|A|A|478
8VK7|1|A|A|479
8VK7|1|A|U|480

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

50S Ribosomal Protein L28