HL_8VK7_054

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

8VK7|1|A|A|2492, 8VK7|1|A|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VK7_054 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1094

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8VK7|1|A|C|2488
8VK7|1|A|U|2489
8VK7|1|A|A|2490
8VK7|1|A|A|2491
8VK7|1|A|A|2492
8VK7|1|A|A|2493
8VK7|1|A|U|2494
8VK7|1|A|G|2495
8VK7|1|A|U|2496
8VK7|1|A|A|2497
8VK7|1|A|A|2498
8VK7|1|A|C|2499
8VK7|1|A|G|2500

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL16

Chain X

50S ribosomal protein L27