HL_8VKV_025

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKV_025 not in the Motif Atlas

Geometric match to HL_8CRE_215

Geometric discrepancy: 0.0516

The information below is about HL_8CRE_215

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8VKV|1|D|C|897
8VKV|1|D|G|898
8VKV|1|D|C|899
8VKV|1|D|A|900
8VKV|1|D|A|901
8VKV|1|D|G|902

Current chains

Chain D

16S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA