HL_8VKV_082

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8VKV|1|a|A|2268, 8VKV|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKV_082 not in the Motif Atlas

Geometric match to HL_5J7L_187

Geometric discrepancy: 0.0734

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VKV|1|a|C|2264
8VKV|1|a|U|2265
8VKV|1|a|A|2266
8VKV|1|a|A|2267
8VKV|1|a|A|2268
8VKV|1|a|G|2269
8VKV|1|a|A|2270
8VKV|1|a|G|2271
8VKV|1|a|U|2272
8VKV|1|a|A|2273
8VKV|1|a|A|2274
8VKV|1|a|C|2275
8VKV|1|a|G|2276

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L27

Chain v

50S ribosomal protein L16