HL_8VKV_083

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKV_083 not in the Motif Atlas

Geometric match to HL_5J7L_219

Geometric discrepancy: 0.1803

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8VKV|1|a|G|2304
8VKV|1|a|U|2305
8VKV|1|a|C|2306
8VKV|1|a|G|2307
8VKV|1|a|G|2308
8VKV|1|a|A|2309
8VKV|1|a|C|2310
8VKV|1|a|A|2311
8VKV|1|a|U|2312

Current chains

Chain a

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L5